DNA Binding Site

						

			
Accessions: CTGCACAC (UniPROBE 20160601), MA0034.2.14 (JASPAR 2024)

			
Organisms: Mus musculus, Plasmodium falciparum, Hordeum vulgare
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: CTGCACAC
Type: Heterodimer
Binding TFs: Q96464 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
UP00042A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00097A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00429A (AP2 domain)
UP00434A (AP2 domain)
Q96464
Binding Motifs: UP00042A_1 mwdaTGTGCACAymmky
UP00097A_1 kggyCGTGYGCAamdh
UP00042A_2 rrmrGCACACACkcmm
UP00097A_2 aaatawgAAawawv
UP00429A_1 thdwrwryACACACayyyrrrw
UP00434A_1 wtswwttTGCACACACahmrrg
MA0034.2 yAACcGmC
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]


Gubler F., Raventos D., Keys M., Watts R., Mundy J., Jacobsen J. V. Target genes and regulatory domains of the GAMYB transcriptional activator in cereal aleurone. Plant J. 17:1-9 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.