Transcription Factor
| Accessions: | GAMYB (Athamap 20091028), Q96464 (JASPAR 2024) |
| Names: | GAMYB, Q96464_HORVU |
| Organisms: | Hordeum vulgare, Hordeum vulgare subsp. vulgare |
| Libraries: | Athamap 20091028 1, JASPAR 2024 2 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 553 |
| Pfam Domains: | 44-91 Myb-like DNA-binding domain 47-106 Myb-like DNA-binding domain 97-140 Myb-like DNA-binding domain 100-143 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MYRVKSESDCEMMHQEDQMDSPVGDDGSSGGGSPHRGGGPPLKKGPWTSAEDAILVDYVK 60 61 KHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTPEEERLIIQLHSKMGNKWA 120 121 RMAAHLPGRTDNEIKNYWNTRIKRCQRAGLPIYPASVCNQSSNEDQQGSSDFNCGENLSS 180 181 DLLNGNGLYLPDFTCDNFIANSEALSYAPQLSAVSISSLLGQSFASKNCGFMDQVNQAGM 240 241 LKQSDPLLPGLSDTINGALSSVDQFSNDSEKLKQALGFDYLHEANSSSKIIAPFGGALTG 300 301 SHAFLNGTFSTSRTINGPLKMELPSLQDTESDPNSWLKYTVAPAMQPTELVDPYLQSPTA 360 361 TPSVKSECASPRNSGLLEELLHEAQGLRSGKNQQLSVRSSSSSVSTPCDTTVVSPEFDLC 420 421 QEYWEERLNEYAPFSGNSLTGSTAPMSAASPDVFQLSKISPAQSPSLGSGEQAMEPAYEP 480 481 GAGDTSSHPENLRPDAFFSGNTADSSVFNNAIAMLLGNDMNTECKPVFGDGIMFDTSVWS 540 541 NLPHACQMSEEFK |
| Interface Residues: | 44, 79, 80, 81, 82, 84, 85, 89, 90, 131, 132, 135, 136, 139, 140, 141, 390, 444, 445 |
| 3D-footprint Homologues: | 3osg_A, 1vfc_A, 1w0t_A, 2kdz_A, 7xur_A, 1mse_C, 3zqc_A, 6kks_A, 1dc1_A |
| Binding Motifs: | GAMYB yAACsGmC MA0034.1 gryAACcGmC MA0034.2 yAACcGmC |
| Binding Sites: | MA0034.2.11 MA0034.2.14 MA0034.1.1 MA0034.1.10 MA0034.1.11 MA0034.1.12 MA0034.1.13 MA0034.1.14 MA0034.1.15 MA0034.1.16 MA0034.1.17 MA0034.1.18 MA0034.1.19 MA0034.1.2 MA0034.1.20 MA0034.1.3 MA0034.1.4 MA0034.1.5 MA0034.1.6 MA0034.1.7 MA0034.1.8 MA0034.1.9 MA0034.2.1 MA0034.2.10 MA0034.2.12 MA0034.2.13 MA0034.2.15 MA0034.2.16 MA0034.2.17 MA0034.2.18 MA0034.2.19 MA0034.2.2 MA0034.2.20 MA0034.2.3 MA0034.2.4 MA0034.2.5 MA0034.2.6 MA0034.2.7 MA0034.2.8 MA0034.2.9 |
| Publications: | Gubler F., Raventos D., Keys M., Watts R., Mundy J., Jacobsen J. V. Target genes and regulatory domains of the GAMYB transcriptional activator in cereal aleurone. Plant J. 17:1-9 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.