Transcription Factor
| Accessions: | UP00042A (UniPROBE 20160601) |
| Names: | (NCBI), gene model 397, Gm397, LOC245109 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q3URS2 |
| Description: | gene model 397, (NCBI): Mus musculus similar to Zinc finger protein 58 (Zfp-58) (Zinc finger protein Mfg-1) (LOC212386), mRNA |
| Length: | 127 |
| Pfam Domains: | 16-38 C2H2-type zinc finger 16-38 Zinc finger, C2H2 type 30-56 Zinc-finger double domain 47-66 C2H2-type zinc finger 61-84 Zinc-finger double domain 73-95 Zinc finger, C2H2 type 73-93 C2H2-type zinc finger 73-92 Zinc-finger of C2H2 type 87-111 Zinc-finger double domain 101-124 Zinc finger, C2H2 type 101-124 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 PCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDR 60 61 RTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHL 120 121 RNYHRSD |
| Interface Residues: | 26, 27, 28, 29, 30, 32, 33, 35, 36, 37, 39, 55, 56, 57, 58, 59, 60, 61, 62, 63, 65, 66, 83, 84, 85, 86, 87, 88, 89, 90, 91, 98, 111, 112, 113, 114, 115, 116, 117, 118, 119, 122 |
| 3D-footprint Homologues: | 7w1m_H, 5ei9_F, 8ssq_A, 2drp_D, 8ssu_A, 5v3j_F, 2gli_A, 5kkq_D, 7eyi_G, 2i13_A, 6e94_A, 7ysf_A, 6wmi_A, 2jpa_A, 1ubd_C, 1tf3_A, 3uk3_C, 8cuc_F, 7y3l_A, 7n5w_A, 5und_A, 1g2f_F, 2kmk_A, 1tf6_A, 6ml4_A, 6blw_A, 6u9q_A, 4x9j_A, 1mey_C, 5kl3_A, 8h9h_G, 2lt7_A, 6a57_A, 5yel_A, 5yj3_D, 6jnm_A, 5k5i_A, 8gn3_A, 1llm_D, 7txc_E, 2wbs_A, 1f2i_J, 4m9v_C, 7y3m_I, 1yuj_A |
| Binding Motifs: | UP00042A_1 mwdaTGTGCACAymmky UP00042A_2 rrmrGCACACACkcmm |
| Binding Sites: | ACTGCACA AGTGCACA AGTGTGCA ATGTGCAC CGTGCACA CTGCACAC CTGTGCAC GATGTGCA GCACACAA GCACATAA GCTGTGCA GGTGCACA GGTGTGCA GTGCACAA GTGCACAC TATGTGCA TCTGTGCA TGCACACA TGTGCACA AATGCACA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.