DNA Binding Site
| Accessions: | TGCACACA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Plasmodium falciparum, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | TGCACACA |
| Type: | Heterodimer |
| Binding TFs: | UP00026A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00042A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00429A (AP2 domain) UP00434A (AP2 domain) UP00439A (AP2 domain) UP00611A (Homeobox domain, 'Paired box' domain) UP00611C (Homeobox domain, 'Paired box' domain) UP00611G (Homeobox domain, 'Paired box' domain) |
| Binding Motifs: | UP00026A_1 kmmaTGTGCACAyAwam UP00042A_1 mwdaTGTGCACAymmky UP00026A_2 mvwrGCACAyAAawwr UP00042A_2 rrmrGCACACACkcmm UP00429A_1 thdwrwryACACACayyyrrrw UP00434A_1 wtswwttTGCACACACahmrrg UP00439A_1 TrtwwtgCRCACACACrhrkmw UP00611A_1 rcrkmwswrTGCAyasrwcmAtr UP00611A_2 tymwakgkTAATTArcatdwwmw UP00611C_1 rcrkmmgtgTGCAcacatcmAtw UP00611G_1 taTkkatgtgTGCAcacdkmygh |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.