Transcription Factor
| Accessions: | UP00026A (UniPROBE 20160601) |
| Names: | Not Available, zinc finger and SCAN domain containing 4, Zscan4 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Not Av |
| Description: | zinc finger and SCAN domain containing 4: Mus musculus BAC clone RP23-35L23 from chromosome 7, complete sequence. |
| Length: | 126 |
| Pfam Domains: | 13-27 Zinc-finger double domain 16-38 C2H2-type zinc finger 16-38 Zinc finger, C2H2 type 30-53 Zinc-finger double domain 62-82 Zinc-finger double domain 72-94 C2H2-type zinc finger 72-94 Zinc finger, C2H2 type 86-110 Zinc-finger double domain 100-123 C2H2-type zinc finger 100-123 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 TFEGYQERLQRDPKPYKCEECPRTFKYPCNLSIHQKTHRKERPFFCKECQIGFYQKSELH 60 61 DHEVIHKAEKPFACSTCGRAFRYKTNLQAHERIHTGEKPYSCSLCNSSFRQSSTFHRHLR 120 121 KFHKSE |
| Interface Residues: | 5, 16, 26, 27, 28, 29, 30, 32, 33, 35, 36, 39, 54, 55, 56, 57, 58, 60, 61, 82, 83, 84, 85, 86, 88, 89, 90, 97, 110, 111, 112, 113, 114, 115, 116, 117, 118, 121 |
| 3D-footprint Homologues: | 6wmi_A, 2kmk_A, 7n5w_A, 8ssu_A, 1tf6_A, 5v3j_F, 2gli_A, 5kkq_D, 5yel_A, 5ei9_F, 8ssq_A, 7w1m_H, 8h9h_G, 7eyi_G, 2i13_A, 6e94_A, 7ysf_A, 2jpa_A, 1ubd_C, 7y3l_A, 1tf3_A, 6jnm_A, 8cuc_F, 6ml4_A, 6blw_A, 4x9j_A, 1mey_C, 7txc_E, 5kl3_A, 2wbs_A, 5und_A, 1g2f_F, 2lt7_A, 6a57_A, 3uk3_C, 5k5i_A, 8gn3_A, 1llm_D, 6u9q_A, 1f2i_J, 2drp_D, 4m9v_C, 7y3m_I, 1yuj_A, 5yj3_D |
| Binding Motifs: | UP00026A_1 kmmaTGTGCACAyAwam UP00026A_2 mvwrGCACAyAAawwr |
| Binding Sites: | AAGTGTGC AATGTGCA ACGTGCAC AGTGCACA AGTGTGCA ATGCACAC ATGTGCAC CGTGCACA CTATGTGC CTGTGCAC GCACACAA GCACACAC GCACACTA GCACATAA GGTGCACA GTGCACAA GTGCACAC TATGTGCA TGCACACA AAGTGCAC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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