DNA Binding Motif
| Accessions: | UP00292A_1 (UniPROBE 20160601) |
| Names: | N3531, Putative transcriptional regulatory protein in BIO3-HXT17 intergenic region, Ynr063w |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | smwhrwWTCTCCGArvccrm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.15 0.43 0.28 0.13 s 02 0.30 0.33 0.19 0.19 m 03 0.28 0.19 0.21 0.32 w 04 0.25 0.26 0.14 0.34 h 05 0.35 0.22 0.25 0.18 r 06 0.42 0.14 0.18 0.26 w 07 0.72 0 0.01 0.27 W 08 0.20 0.03 0 0.77 T 09 0.08 0.85 0.02 0.05 C 10 0.01 0.01 0.02 0.97 T 11 0 0.99 0 0 C 12 0 0.97 0.03 0 C 13 0 0 0.99 0 G 14 0.84 0.02 0.12 0.02 A 15 0.33 0.13 0.37 0.17 r 16 0.28 0.28 0.31 0.13 v 17 0.19 0.34 0.22 0.24 c 18 0.16 0.46 0.17 0.21 c 19 0.31 0.20 0.37 0.12 r 20 0.28 0.30 0.24 0.18 m |
| Binding TFs: | UP00292A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AACTCCGA AATCTCCG AATTCCGA ACGGAGAA ATATCCGA ATCTCCGA ATCTCCGC ATCTCCGG ATTCTCCG ATTTCCGA CATCTCCG CGGAAATA CGGAGAAA CGGAGATA CGGAGATC CGGAGTTA CGGATATA CTCGGAGA TCGGAAAA TCGGAGAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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