DNA Binding Site

Accessions: CGGAGATA (UniPROBE 20160601)
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: CGGAGATA
Type: Heterodimer
Binding TFs: UP00310A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00466A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain )
UP00281A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00292A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00295A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00298A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00301A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00304A (GATA zinc finger)
UP00323A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00458A
UP00476A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Binding Motifs: UP00281A_1 mssabmrCGGArATwasdsgk
UP00292A_1 smwhrwWTCTCCGArvccrm
UP00295A_1 sayhmrCGGAaATaagdcggw
UP00298A_1 tykgswTAwaTCCGraatbtd
UP00301A_1 wtyaarwAwCTCCGGArtwkw
UP00304A_1 swmdygRGATCTACamrcws
UP00310A_1 srhssrCGGAAATAAsssdsh
UP00323A_1 wmvcdyCGGAGATAwtkdkm
UP00458A_1 / UP00458A_2 scrwycyCGGAGwTAAcgccsky
UP00458A_3 TCGGCCGA
UP00466A_1 / UP00466A_2 ccmaryGkCGGkGTTATAkcamr
UP00466A_3 wTAGTrCCG
UP00476A_1 / UP00476A_2 ghskybaAACTCCGrvyckggs
UP00476A_3 CGGAgTCCG
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.