DNA Binding Site
| Accessions: | CGGAGATA (UniPROBE 20160601) |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CGGAGATA |
| Type: | Heterodimer |
| Binding TFs: | UP00310A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00466A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain ) UP00281A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00292A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00295A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00298A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00301A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00304A (GATA zinc finger) UP00323A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00458A UP00476A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Motifs: | UP00281A_1 mssabmrCGGArATwasdsgk UP00292A_1 smwhrwWTCTCCGArvccrm UP00295A_1 sayhmrCGGAaATaagdcggw UP00298A_1 tykgswTAwaTCCGraatbtd UP00301A_1 wtyaarwAwCTCCGGArtwkw UP00304A_1 swmdygRGATCTACamrcws UP00310A_1 srhssrCGGAAATAAsssdsh UP00323A_1 wmvcdyCGGAGATAwtkdkm UP00458A_1 / UP00458A_2 scrwycyCGGAGwTAAcgccsky UP00458A_3 TCGGCCGA UP00466A_1 / UP00466A_2 ccmaryGkCGGkGTTATAkcamr UP00466A_3 wTAGTrCCG UP00476A_1 / UP00476A_2 ghskybaAACTCCGrvyckggs UP00476A_3 CGGAgTCCG |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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