DNA Binding Motif

						

			
Accessions: UP00062A_1 (UniPROBE 20160601)

			
Names: AA682046, Sox-4, Sox4, SRY-box containing gene 4, Transcription factor SOX-4
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: akdarAACAAAGracww
Weblogo: 
PSSM: P0      A      C      G      T
01   0.43   0.23   0.12   0.22      a
02   0.20   0.24   0.30   0.26      k
03   0.30   0.16   0.29   0.25      d
04   0.43   0.15   0.20   0.22      a
05   0.26   0.08   0.48   0.19      r
06   0.84   0.05   0.10   0.01      A
07   0.98      0      0   0.01      A
08      0   0.98   0.01   0.01      C
09   0.99      0      0   0.01      A
10   0.99      0      0      0      A
11   0.77      0      0   0.22      A
12   0.24      0   0.76      0      G
13   0.37   0.09   0.53   0.01      r
14   0.48   0.20   0.24   0.08      a
15   0.19   0.36   0.22   0.24      c
16   0.25   0.23   0.16   0.36      w
17   0.40   0.18   0.16   0.25      w
Binding TFs: UP00062A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: AAACAAAG
AACAAAAG
AACAAAGA
AACAAAGC
AACAATAA
AACAATAG
AACAATGG
AATTGTTC
ACAAAGAA
ACAAAGAG
ACAAAGGA
ACAACAAT
ACAATAGA
AGAACAAT
AGACAAAG
AGACAATA
CTTTGTTA
CTTTGTTC
GAACAATA
GACAAAGA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.