Transcription Factor
| Accessions: | UP00062A (UniPROBE 20160601) |
| Names: | AA682046, Sox-4, Sox4, SRY-box containing gene 4, Transcription factor SOX-4 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q06945 |
| Description: | SRY-box containing gene 4: Mus musculus BAC Clone 262c6 RPCI-23, complete sequence |
| Length: | 101 |
| Pfam Domains: | 17-85 HMG (high mobility group) box 18-75 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 GGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKD 60 61 SDKIPFIQEAERLRLKHMADYPDYKYRPRKKVKSGNAGAGS |
| Interface Residues: | 19, 22, 24, 25, 28, 32, 43, 44, 45, 48, 86, 90 |
| 3D-footprint Homologues: | 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 3tmm_A, 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 2lef_A, 1hry_A, 3tq6_B, 1ckt_A |
| Binding Motifs: | UP00062A_1 akdarAACAAAGracww UP00062A_2 grwarAATTGTtasrra |
| Binding Sites: | AAACAAAG AACAAAAG AACAAAGA AACAAAGC AACAATAA AACAATAG AACAATGG AATTGTTC ACAAAGAA ACAAAGAG ACAAAGGA ACAACAAT ACAATAGA AGAACAAT AGACAAAG AGACAATA CTTTGTTA CTTTGTTC GAACAATA GACAAAGA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.