DNA Binding Motif
| Accessions: | UP00323A_1 (UniPROBE 20160601) |
| Names: | Not Available, Ydr520c |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | wmvcdyCGGAGATAwtkdkm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.28 0.21 0.22 0.29 w 02 0.36 0.33 0.17 0.15 m 03 0.29 0.28 0.26 0.17 v 04 0.13 0.41 0.23 0.23 c 05 0.27 0.23 0.25 0.25 d 06 0.14 0.35 0.08 0.43 y 07 0 0.99 0 0 C 08 0 0 0.99 0 G 09 0 0 0.99 0 G 10 0.98 0 0.02 0 A 11 0.04 0.01 0.95 0.01 G 12 0.89 0 0 0.11 A 13 0.09 0 0 0.91 T 14 0.98 0 0 0.01 A 15 0.47 0.05 0.07 0.41 w 16 0.20 0.19 0.12 0.49 t 17 0.20 0.14 0.25 0.41 k 18 0.26 0.15 0.29 0.30 d 19 0.18 0.18 0.26 0.37 k 20 0.34 0.28 0.23 0.14 m |
| Binding TFs: | UP00323A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AATCTCCG ACGGAGAA ACGGAGAT ATCTCCGA ATCTCCGG ATTCTCCG ATTTCCGG ATTTTCCG CCGGAGAA CGGAAATA CGGAATTA CGGACATA CGGACTTA CGGAGAAA CGGAGATA CGGAGTTA CGGATTTA CGGGGATA GGAGATAA TCGGAGAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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