Transcription Factor
| Accessions: | UP00024A (UniPROBE 20160601) |
| Names: | Gli5, GLIS family zinc finger 2, Glis2, Klf16, MGC36775, Nkl |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q8R4X9 |
| Description: | GLIS family zinc finger 2: GLIS family zinc finger 2 (Glis2), mRNA |
| Length: | 180 |
| Pfam Domains: | 72-94 Zinc-finger double domain 83-101 C2H2-type zinc finger 83-105 Zinc finger, C2H2 type 97-124 Zinc-finger double domain 111-135 C2H2-type zinc finger 111-135 Zinc finger, C2H2 type 141-165 Zinc finger, C2H2 type 141-165 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 PKDKCLSPELPLAKQLVCRWAKCNQLFELLQDLVDHVNDHHVKPEQDARYCCHWEGCARH 60 61 GRGFNARYKMLIHIRTHTNEKPHRCPTCNKSFSRLENLKIHNRSHTGEKPYVCPYEGCNK 120 121 RYSNSSDRFKHTRTHYVDKPYYCKMPGCHKRYTDPSSLRKHIKAHGHFVSHEQQELLQLR 180 |
| Interface Residues: | 29, 31, 32, 35, 40, 65, 66, 67, 68, 69, 70, 71, 72, 75, 78, 93, 94, 95, 96, 97, 99, 100, 123, 124, 125, 126, 127, 128, 129, 130, 131, 153, 154, 155, 156, 157, 158, 159, 160, 161 |
| 3D-footprint Homologues: | 5v3j_F, 5yel_A, 2i13_A, 7ysf_A, 7w1m_H, 3uk3_C, 8cuc_F, 1tf3_A, 6ml4_A, 2gli_A, 1g2f_F, 1tf6_A, 6u9q_A, 4x9j_A, 5kl3_A, 6wmi_A, 5ei9_F, 8h9h_G, 7eyi_G, 8gn3_A, 6e94_A, 5k5i_A, 7n5w_A, 1ubd_C, 2jpa_A, 6jnm_A, 7y3l_A, 6blw_A, 5kkq_D, 1llm_D, 8ssq_A, 1mey_C, 5und_A, 2drp_D, 2kmk_A, 8ssu_A, 2lt7_A, 7y3m_I, 6a57_A, 7txc_E, 2wbs_A, 5yj3_D, 1f2i_J, 4m9v_C |
| Binding Motifs: | UP00024A_1 ywwsGACCCCCCayrd UP00024A_2 wwTAttAwtAAAga |
| Binding Sites: | AAAGGGGT AAGGGGTC ACCCCCCA ACCCCCCC ACCCCCCG ACCCCCCT ACCCCCTA AGACCCCC AGACCCCT AGGGGGTC ATACCCCC ATGGGGGG CACCCCCC CCCCCCAC CCCCCCGC GACCCCCA GACCCCCC GGACCCCC GGGGGGTA GGGGGTAC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.