Transcription Factor
| Accessions: | T01848 (AthalianaCistrome v4_May2016), C0SUW7 (JASPAR 2024) |
| Names: | AT1G20910, T01848;, ARID domain-containing protein 6, ARID6_ARATH, AT-rich interactive domain-containing protein 6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:ARID |
| Length: | 398 |
| Pfam Domains: | 107-193 ARID/BRIGHT DNA binding domain |
| Sequence: (in bold interface residues) | 1 MVDTEMQEQDVTFGALVETKYLEEEPLEPENDHNPSEIPQPLLLGDGQANNGHGMNGGAV 60 61 GVVDHSERKTRRVQMLSPKTEGENAKKRKTWLLDSEAQGTDEAGTPVEQVAFLREVEAFY 120 121 KESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPPKTCTTVSYT 180 181 FRNFYEKALLEYEKCLRNNGELNLPGSTLILSSSVEKEPSSHQGSGSGRARRDSAARAMQ 240 241 GWHAQRLVGSGEVTAPAVKDKGLISTPKHKKLKSIGLQKHKQQTSMDHVVTNEADKQLAA 300 301 EVVDVGPVADWVKINVKESKDSFEIFALVPGLLRKEVRIQSDPAGKVVITGQPEQLDNPW 360 361 GITPFKKIVDLSARIDPLHTSAVMSMHGRLFIRVPFEQ |
| Interface Residues: | 162, 175, 176, 179, 180 |
| 3D-footprint Homologues: | 2oeh_A, 1kqq_A |
| Binding Motifs: | M0143 wAAwTyAATTt UN0351.1 wwwwTTAATTGAAww UN0351.2 wwwTTAATTGAAww |
| Binding Sites: | UN0351.1.1 UN0351.1.10 / UN0351.1.9 UN0351.1.11 UN0351.1.12 UN0351.1.10 / UN0351.1.13 UN0351.1.11 / UN0351.1.14 UN0351.1.15 UN0351.1.12 / UN0351.1.16 UN0351.1.13 / UN0351.1.17 UN0351.1.14 / UN0351.1.18 UN0351.1.19 UN0351.1.2 UN0351.1.15 / UN0351.1.20 UN0351.1.3 UN0351.1.3 / UN0351.1.4 UN0351.1.4 / UN0351.1.5 UN0351.1.5 / UN0351.1.6 UN0351.1.6 / UN0351.1.7 UN0351.1.7 / UN0351.1.8 UN0351.1.8 / UN0351.1.9 UN0351.1.1 UN0351.1.16 UN0351.1.17 UN0351.1.18 UN0351.1.19 UN0351.1.20 UN0351.2.1 UN0351.2.10 UN0351.2.11 UN0351.2.12 UN0351.2.13 UN0351.2.14 UN0351.2.15 UN0351.2.16 UN0351.2.17 UN0351.2.18 UN0351.2.19 UN0351.2.2 UN0351.2.20 UN0351.2.3 UN0351.2.4 UN0351.2.5 UN0351.2.6 UN0351.2.7 UN0351.2.8 UN0351.2.9 |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.