Transcription Factor
| Accessions: | UP00303A (UniPROBE 20160601) |
| Names: | Fhl1, P8283.15, Pre-rRNA-processing protein FHL1, YPR104C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P39521 |
| Description: | Putative transcriptional regulator with similarity to DNA-binding domain of Drosophila forkhead; required for rRNA processing |
| Length: | 207 |
| Pfam Domains: | 51-139 Fork head domain |
| Sequence: (in bold interface residues) | 1 KNEPKSKKKITTGAKPKKAQTKPAVKKEKKPPKIPKKVYTLEEIPVEYRTKPTVSYSAML 60 61 TTCIRKYSTAKGMSLSEIYAGIRELFPYYKYCPDGWQSSVRHNLSLNKSFRKVSKEGKGW 120 121 LWGLDEEYIAERERQKKKQSEIAVAKAQAAQLKLEQQQHKLQQVPQRGKKDIVSQRSNVN 180 181 ARKQNISQTLAANRAASNRKNTASDNQ |
| Interface Residues: | 95, 97, 98, 99, 101, 102, 103, 105, 106, 115, 118 |
| 3D-footprint Homologues: | 7vox_H, 2hdc_A, 7yzb_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 7tdx_A, 3l2c_A, 3qrf_G |
| Binding Motifs: | UP00303A_1 rrwawtGACGCAawtwhgwk |
| Binding Sites: | TGACGCAA ACGCAAAC ACGCAAAT ACGCAATA AGACGCAA AGTGCGTC ATTGCGTC CGACGCAA CGTGCGTC GACGCAAA GACGCAAC GACGCACA GACGCATA GCGACGCA GTGACGCA GTGCGTCA TGCGTCAA ACACGCAA CGACGCAC GGGACGCA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.