DNA Binding Site
| Accessions: | GACGCAAC (UniPROBE 20160601), MA2048.2.4 (JASPAR 2024), UN0432.2.15 (JASPAR 2024), UN0432.2.19 (JASPAR 2024) |
| Organisms: | Saccharomyces cerevisiae, Eremothecium gossypii, Kluyveromyces lactis, Arabidopsis thaliana, Zea mays |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GACGCAAC |
| Type: | Heterodimer |
| Binding TFs: | UP00303A (Fork head domain) UP00516A (Fork head domain) UP00524A (Fork head domain) A4VCM0 (No apical meristem (NAM) protein) B7ZYK9 (GRAS family transcription factor) A4VCM0 B7ZYK9 |
| Binding Motifs: | UP00303A_1 rrwawtGACGCAawtwhgwk UP00516A_1 cmmsgrgyGACGCAAAhsgwmrv UP00516A_2 mhrmsyacrktGcgyGsktkay UP00524A_1 tsctdrarysACGCAAwhrvcyy UP00524A_2 ydydgkggCGCGCGTcrtmhtms MA2048.2 sAAGCAAc UN0432.2 GACGCCAC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.