DNA Binding Motif
| Accessions: | UP00303A_1 (UniPROBE 20160601) |
| Names: | Fhl1, P8283.15, Pre-rRNA-processing protein FHL1, YPR104C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | rrwawtGACGCAawtwhgwk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.36 0.14 0.28 0.22 r 02 0.40 0.13 0.32 0.14 r 03 0.42 0.15 0.18 0.25 w 04 0.47 0.09 0.24 0.20 a 05 0.27 0.12 0.23 0.38 w 06 0.25 0.25 0.21 0.30 t 07 0.05 0.10 0.84 0.02 G 08 0.93 0.01 0.02 0.04 A 09 0 0.98 0 0.01 C 10 0 0 0.95 0.05 G 11 0.01 0.99 0 0 C 12 0.91 0.01 0.07 0.02 A 13 0.65 0.21 0.05 0.09 a 14 0.51 0.09 0.04 0.37 w 15 0.24 0.18 0.18 0.40 t 16 0.30 0.19 0.18 0.33 w 17 0.26 0.29 0.18 0.28 h 18 0.20 0.18 0.39 0.23 g 19 0.27 0.11 0.14 0.47 w 20 0.17 0.15 0.29 0.39 k |
| Binding TFs: | UP00303A (Fork head domain) |
| Binding Sites: | TGACGCAA ACGCAAAC ACGCAAAT ACGCAATA AGACGCAA AGTGCGTC ATTGCGTC CGACGCAA CGTGCGTC GACGCAAA GACGCAAC GACGCACA GACGCATA GCGACGCA GTGACGCA GTGCGTCA TGCGTCAA ACACGCAA CGACGCAC GGGACGCA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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