Transcription Factor
| Accessions: | UP00093A (UniPROBE 20160601) |
| Names: | Klf7, Krueppel-like factor 7, Kruppel-like factor 7 (ubiquitous) |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q99JB0 |
| Description: | Kruppel-like factor 7 (ubiquitous): Mus musculus Kruppel-like factor 7 (ubiquitous) (Klf7), mRNA |
| Length: | 99 |
| Pfam Domains: | 16-40 C2H2-type zinc finger 16-40 Zinc finger, C2H2 type 32-53 Zinc-finger double domain 46-70 C2H2-type zinc finger 46-70 Zinc finger, C2H2 type 63-86 Zinc-finger double domain 76-98 C2H2-type zinc finger 76-98 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 GGGGADTCPENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARS 60 61 DELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI |
| Interface Residues: | 28, 29, 30, 31, 32, 34, 35, 37, 38, 41, 57, 58, 59, 60, 61, 62, 64, 65, 66, 69, 86, 87, 88, 89, 90, 91, 92, 93, 94, 97 |
| 3D-footprint Homologues: | 6ml4_A, 5v3j_F, 7n5w_A, 3uk3_C, 1tf3_A, 6jnm_A, 1tf6_A, 2i13_A, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 5ei9_F, 1mey_C, 5kl3_A, 7ysf_A, 6wmi_A, 2kmk_A, 5und_A, 2gli_A, 1g2f_F, 7eyi_G, 8h9h_G, 2lt7_A, 7y3m_I, 6e94_A, 6a57_A, 2jpa_A, 5k5i_A, 7w1m_H, 7y3l_A, 4m9v_C, 8cuc_F, 4x9j_A, 8gn3_A, 1llm_D, 2wbs_A, 5yel_A, 7txc_E, 2drp_D, 1f2i_J, 8ssq_A, 5k5l_F, 5yj3_D |
| Binding Motifs: | UP00093A_1 tyrrCCmCGCCChyww UP00093A_2 varywTACGCCChamwk |
| Binding Sites: | CCCGCCCC AACGCCCA AAGGGCGT ACGCCCAC ACGCCCAT ACGCCCCC ACGCCCCT ACGCCCTA AGGGCGGA AGGGCGGG AGGGCGTG CACGCCCA CACGCCCC CCACACCC CCACGCCC CCCCACCC CCCGCCCA CTACGCCC GGGGCGTA ACACGCCC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.