DNA Binding Site
| Accessions: | CCCCACCC (UniPROBE 20160601), MA0039.5.18 (JASPAR 2024), MA0039.5.2 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Plasmodium falciparum, Arabidopsis thaliana, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCCCACCC |
| Type: | Heterodimer |
| Binding TFs: | UP00093A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00293A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) O43474 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00443B (AP2 domain) UP00581A UP00599A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00599C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00611H (Homeobox domain, 'Paired box' domain) O43474 |
| Binding Motifs: | UP00093A_1 tyrrCCmCGCCChyww UP00293A_1 kgsastGCGGGGTAmtgyAa UP00093A_2 varywTACGCCChamwk UP00443B_1 mytytyayrTmTTGCCwhcmbmm UP00581A_1 dvGGTwGCGTAa UP00581A_2 hdAGTCAACGyhr UP00599A_1 wsdymysCCCCrCCCmsyygrm UP00599A_2 wwtwwrrCCCCGCCCywymmsy UP00599C_2 wwhywmcCCGCCCmmCcrbksws UP00611H_1 vgassygykCCsCACCtkksay MA0039.5 CCCCACCC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.