DNA Binding Motif

						

			
Accessions: UP00093A_2 (UniPROBE 20160601)

			
Names: Klf7, Krueppel-like factor 7, Kruppel-like factor 7 (ubiquitous)
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: varywTACGCCChamwk
Weblogo: 
PSSM: P0      A      C      G      T
01   0.39   0.26   0.25   0.10      v
02   0.42   0.21   0.23   0.14      a
03   0.26   0.19   0.31   0.23      r
04   0.06   0.37   0.21   0.35      y
05   0.61   0.01   0.11   0.28      w
06   0.18   0.01   0.07   0.74      T
07   0.76   0.22   0.01   0.01      A
08      0   0.98      0   0.01      C
09   0.04      0   0.95   0.01      G
10   0.01   0.98   0.01      0      C
11   0.01   0.98   0.01      0      C
12   0.01   0.93      0   0.06      C
13   0.39   0.30   0.05   0.26      h
14   0.51   0.12   0.16   0.21      a
15   0.30   0.31   0.20   0.20      m
16   0.30   0.23   0.15   0.32      w
17   0.19   0.18   0.29   0.35      k
Binding TFs: UP00093A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: CCCGCCCC
AACGCCCA
AAGGGCGT
ACGCCCAC
ACGCCCAT
ACGCCCCC
ACGCCCCT
ACGCCCTA
AGGGCGGA
AGGGCGGG
AGGGCGTG
CACGCCCA
CACGCCCC
CCACACCC
CCACGCCC
CCCCACCC
CCCGCCCA
CTACGCCC
GGGGCGTA
ACACGCCC
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.