DNA Binding Motif
| Accessions: | UP00093A_1 (UniPROBE 20160601) |
| Names: | Klf7, Krueppel-like factor 7, Kruppel-like factor 7 (ubiquitous) |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | tyrrCCmCGCCChyww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.20 0.17 0.43 t 02 0.17 0.30 0.25 0.29 y 03 0.27 0.15 0.40 0.19 r 04 0.55 0.06 0.34 0.05 r 05 0.05 0.90 0.02 0.03 C 06 0.04 0.92 0.01 0.03 C 07 0.41 0.57 0.02 0.01 m 08 0.01 0.98 0 0.01 C 09 0.20 0 0.75 0.05 G 10 0 0.99 0 0 C 11 0 0.99 0 0 C 12 0 0.93 0 0.07 C 13 0.26 0.42 0.02 0.29 h 14 0.18 0.25 0.09 0.48 y 15 0.35 0.20 0.14 0.32 w 16 0.26 0.17 0.24 0.34 w |
| Binding TFs: | UP00093A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | CCCGCCCC AACGCCCA AAGGGCGT ACGCCCAC ACGCCCAT ACGCCCCC ACGCCCCT ACGCCCTA AGGGCGGA AGGGCGGG AGGGCGTG CACGCCCA CACGCCCC CCACACCC CCACGCCC CCCCACCC CCCGCCCA CTACGCCC GGGGCGTA ACACGCCC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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