Transcription Factor

Accessions: B5KMS8 (JASPAR 2024)
Names: B5KMS8_SOYBN, HAP3 protein, LEC1a, Transcription factor LEC1-A
Organisms: Glycine max
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: B5KMS8
Length: 223
Pfam Domains: 62-126 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
64-126 Core histone H2A/H2B/H3/H4
Sequence:
(in bold interface residues)
1 METGGFHGYRKLPNTTSGLKLSVSDMNMNMRQQQVASSDQNCSNHSAAGEENECTVREQD 60
61 RFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAE 120
121 DVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLATAFVPPPFH 180
181 HHNGYFGAAMPMGTYVRETPPNAASSHHHHGISNAHEPNARSI
Interface Residues: 57, 58, 61, 62, 66, 81, 84, 151
3D-footprint Homologues: 2ypa_A, 4g92_B, 6r2v_B, 4awl_B, 8hr1_F, 3azk_F, 8t9f_F, 5mlu_F, 3w99_F, 5o9g_F, 7wlr_E, 5t5k_E, 7cvo_B, 1jfi_B
Binding Motifs: UN0422.1 caCGTGGCAyw
UN0423.1 daCAAGTGkm
UN0424.1 wyAtGTGTCww
UN0422.2 aCGTGGCA
UN0423.2 CAAGTG
UN0424.2 AtGTGTC
Binding Sites: UN0423.2.7
UN0422.2.1 / UN0422.2.12 / UN0422.2.14 / UN0422.2.5 / UN0422.2.6
UN0422.2.11 / UN0422.2.7
UN0422.2.2 / UN0422.2.4 / UN0422.2.8
UN0422.2.10 / UN0422.2.13 / UN0422.2.18
UN0422.1.18
UN0422.1.12 / UN0422.1.15
UN0422.1.1
UN0422.1.6 / UN0422.1.8
UN0422.1.10 / UN0422.1.12
UN0422.1.11 / UN0422.1.14
UN0422.1.13 / UN0422.1.17
UN0422.1.14 / UN0422.1.19
UN0422.1.15 / UN0422.1.20
UN0422.1.16
UN0422.1.17
UN0422.1.19
UN0422.1.2 / UN0422.1.3
UN0422.1.20
UN0422.1.3 / UN0422.1.5
UN0422.1.4 / UN0422.1.6
UN0422.1.5 / UN0422.1.7
UN0422.1.7 / UN0422.1.9
UN0422.1.10 / UN0422.1.8
UN0422.1.11 / UN0422.1.9
UN0423.1.1
UN0423.1.10
UN0423.1.11
UN0423.1.12
UN0423.1.13
UN0423.1.14
UN0423.1.15
UN0423.1.16 / UN0423.1.20
UN0423.1.17
UN0423.1.18
UN0423.1.19
UN0423.1.2
UN0423.1.3
UN0423.1.13 / UN0423.1.4
UN0423.1.20 / UN0423.1.5
UN0423.1.6
UN0423.1.7
UN0423.1.8
UN0423.1.9
UN0424.1.1
UN0424.1.10
UN0424.1.11
UN0424.1.12
UN0424.1.13
UN0424.1.14
UN0424.1.15
UN0424.1.16
UN0424.1.17
UN0424.1.18
UN0424.1.19
UN0424.1.2
UN0424.1.20
UN0424.1.3
UN0424.1.4 / UN0424.1.7
UN0424.1.5 / UN0424.1.9
UN0424.1.15 / UN0424.1.6
UN0424.1.20 / UN0424.1.7
UN0424.1.8
UN0424.1.9
UN0424.2.1 / UN0424.2.13 / UN0424.2.14 / UN0424.2.16 / UN0424.2.2 / UN0424.2.4
UN0422.2.15 / UN0422.2.16
UN0422.1.4
UN0422.2.19
UN0422.2.17
UN0422.1.13
UN0422.1.16
UN0422.1.18
UN0422.1.2
UN0422.2.20
UN0422.2.3
UN0422.2.9
UN0423.1.10
UN0423.1.11
UN0423.1.12
UN0423.1.14 / UN0423.1.15
UN0423.1.16
UN0423.1.17
UN0423.1.18
UN0423.1.19
UN0423.1.4
UN0423.1.5
UN0423.1.6
UN0423.1.7
UN0423.1.8
UN0423.1.9
UN0423.2.1 / UN0423.2.10 / UN0423.2.11 / UN0423.2.13 / UN0423.2.14 / UN0423.2.15 / UN0423.2.16 / UN0423.2.17 / UN0423.2.18 / UN0423.2.19 / UN0423.2.2 / UN0423.2.20 / UN0423.2.3 / UN0423.2.4 / UN0423.2.5 / UN0423.2.6 / UN0423.2.8 / UN0423.2.9
UN0423.2.12
UN0424.1.10
UN0424.1.11
UN0424.1.12
UN0424.1.13
UN0424.1.14
UN0424.1.16
UN0424.1.17
UN0424.1.18
UN0424.1.19
UN0424.1.4
UN0424.1.5
UN0424.1.6
UN0424.1.8
UN0424.2.10 / UN0424.2.15 / UN0424.2.19
UN0424.2.11 / UN0424.2.6
UN0424.2.12
UN0424.2.17
UN0424.2.18 / UN0424.2.3
UN0424.2.20
UN0424.2.5
UN0424.2.7
UN0424.2.8
UN0424.2.9
Related annotations: PaperBLAST

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