DNA Binding Motif

						

			
Accessions: UN0422.1 (JASPAR 2024)

			
Names: LEC1-A
Organisms: Glycine max
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: caCGTGGCAyw
Weblogo: 
PSSM: P0      A      C      G      T
01   3294   7023   2759   3467      c
02   9508   1783   2775   2477      a
03    942  14394    501    706      C
04    609    207  15158    569      G
05    452    435    174  15482      T
06    567    401  15073    502      G
07    892    820  12672   2159      G
08   1110  14415    672    346      C
09  12833    887   1497   1326      A
10   4101   4154   3848   4440      y
11   4425   3805   3775   4538      w
Type: Heterodimer
Binding TFs: B5KMS8 (Core histone H2A/H2B/H3/H4, Histone-like transcription factor (CBF/NF-Y) and archaeal histone)
B5KMS8
Binding Sites: UN0422.1.18
UN0422.1.12 / UN0422.1.15
UN0422.1.1
UN0422.1.6 / UN0422.1.8
UN0422.1.10 / UN0422.1.12
UN0422.1.11 / UN0422.1.14
UN0422.1.13 / UN0422.1.17
UN0422.1.14 / UN0422.1.19
UN0422.1.15 / UN0422.1.20
UN0422.1.16
UN0422.1.17
UN0422.1.19
UN0422.1.2 / UN0422.1.3
UN0422.1.20
UN0422.1.3 / UN0422.1.5
UN0422.1.4 / UN0422.1.6
UN0422.1.5 / UN0422.1.7
UN0422.1.7 / UN0422.1.9
UN0422.1.10 / UN0422.1.8
UN0422.1.11 / UN0422.1.9
UN0422.1.4
UN0422.1.13
UN0422.1.16
UN0422.1.18
UN0422.1.2
			
	
			


			

				

				
				
				
				

			

			

		

	
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