DNA Binding Motif

Accessions: UN0422.2 (JASPAR 2024)
Names: LEC1-A
Organisms: Glycine max
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 8
Consensus: aCGTGGCA
Weblogo:
PSSM: P0 A C G T
01 9508 1783 2775 2477 a
02 942 14394 501 706 C
03 609 207 15158 569 G
04 452 435 174 15482 T
05 567 401 15073 502 G
06 892 820 12672 2159 G
07 1110 14415 672 346 C
08 12833 887 1497 1326 A
Type: Heterodimer
Binding TFs: B5KMS8 (Core histone H2A/H2B/H3/H4, Histone-like transcription factor (CBF/NF-Y) and archaeal histone)
B5KMS8
Binding Sites: UN0422.2.1 / UN0422.2.12 / UN0422.2.14 / UN0422.2.5 / UN0422.2.6
UN0422.2.11 / UN0422.2.7
UN0422.2.2 / UN0422.2.4 / UN0422.2.8
UN0422.2.10 / UN0422.2.13 / UN0422.2.18
UN0422.2.15 / UN0422.2.16
UN0422.2.19
UN0422.2.17
UN0422.2.20
UN0422.2.3
UN0422.2.9

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