DNA Binding Site

Accessions: ACGTGGCA (UniPROBE 20160601), MA1351.3.2 (JASPAR 2024), MA1351.3.6 (JASPAR 2024), MA1351.3.7 (JASPAR 2024), MA1351.3.9 (JASPAR 2024), MA1808.2.10 (JASPAR 2024), MA1808.2.14 (JASPAR 2024), MA1808.2.5 (JASPAR 2024), MA1808.2.8 (JASPAR 2024), MA1811.2.10 (JASPAR 2024), MA1811.2.4 (JASPAR 2024), MA1811.2.6 (JASPAR 2024), UN0422.2.1 (JASPAR 2024), UN0422.2.12 (JASPAR 2024), UN0422.2.14 (JASPAR 2024), UN0422.2.5 (JASPAR 2024), UN0422.2.6 (JASPAR 2024), UN0690.2.12 (JASPAR 2024), UN0690.2.18 (JASPAR 2024), UN0690.2.2 (JASPAR 2024)
Organisms: Saccharomyces cerevisiae, Arabidopsis thaliana, Glycine max
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: ACGTGGCA
Type: Heterodimer
Binding TFs: UP00457A (Basic region leucine zipper)
P42776 (bZIP transcription factor, Basic region leucine zipper, G-box binding protein MFMR)
B5KMS8 (Core histone H2A/H2B/H3/H4, Histone-like transcription factor (CBF/NF-Y) and archaeal histone)
I1KFN0 (bZIP transcription factor, Basic region leucine zipper)
K7M309 (bZIP transcription factor, Basic region leucine zipper)
Q8LCG7 (Core histone H2A/H2B/H3/H4, Histone-like transcription factor (CBF/NF-Y) and archaeal histone)
B5KMS8
I1KFN0
K7M309
P42776
Q8LCG7
Binding Motifs: UP00457A_1 srkggGgACACGTGTymasawc
MA1351.3 ACGTGGCA
MA1808.2 aCGTGGCA
MA1811.2 aCGTGGCA
UN0422.2 aCGTGGCA
UN0690.2 ACGTGGCA
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]

Liao Y, Zou HF, Wei W, Hao YJ, Tian AG, Huang J, Liu YF, Zhang JS, Chen SY. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta 228:225-40 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.