Transcription Factor
| Accessions: | T12936 (AthalianaCistrome v4_May2016), Q9C7C3 (JASPAR 2024) |
| Names: | AT3G12130, T12936;, AtC3H36, C3H36_ARATH, Zinc finger CCCH domain-containing protein 36 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), family:C3H |
| Length: | 248 |
| Pfam Domains: | 38-61 Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115-177 KH domain 125-157 KH domain 214-239 Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| Sequence: (in bold interface residues) | 1 MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFL 60 61 HYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRFSGRGESGPGHVSNFGDSATARFSV 120 121 DASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDL 180 181 IGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEA 240 241 ELRKSGIV |
| Interface Residues: | 125, 127, 129, 136, 140, 146, 148, 149, 151, 159 |
| 3D-footprint Homologues: | 1j4w_A, 1zzi_A |
| Binding Motifs: | M0341 aawsAAAAAGkwra UN0404.1 aawsAAAAAGkwra UN0404.2 AAAAAGkwr UN0844.1 AAAAAGkwr |
| Related annotations: | PaperBLAST |
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