DNA Binding Motif

						

			
Accessions: UN0404.1 (JASPAR 2024)

			
Names: KHZ1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: aawsAAAAAGkwra
Weblogo: 
PSSM: P0      A      C      G      T
01    480    127    222    172      a
02    420    173    187    220      a
03    372    137    230    262      w
04    168    362    307    163      s
05    717 98.333    118 66.667      A
06    762 21.667      0    217      A
07   1000      0      0      0      A
08   1000      0      0      0      A
09    985      0     15      0      A
10      0      0   1000      0      G
11 98.333    130    347    425      k
12    273    105    172    450      w
13    585     15    298    102      r
14    477    173    148    202      a
Type: Heterodimer
Binding TFs: Q9C7C3 (KH domain, Zinc finger C-x8-C-x5-C-x3-H type (and similar), KH domain)
Q9C7C3
			
	
			


			

				

				
				
				
				

			

			

		

	
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