DNA Binding Motif

						

			
Accessions: M0341 (AthalianaCistrome v4_May2016)

			
Names: AT3G12130.ampDAP, T12936;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 14
Consensus: aawsAAAAAGkwra
Weblogo: 
PSSM: P0      A      C      G      T
01    288     76    133    103      a
02    252    104    112    132      a
03    223     82    138    157      w
04    101    217    184     98      s
05    430     59     71     40      A
06    457     13      0    130      A
07    600      0      0      0      A
08    600      0      0      0      A
09    591      0      9      0      A
10      0      0    600      0      G
11     59     78    208    255      k
12    164     63    103    270      w
13    351      9    179     61      r
14    286    104     89    121      a
Binding TFs: T12936 (KH domain, Zinc finger C-x8-C-x5-C-x3-H type (and similar), KH domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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