DNA Binding Site
| Accessions: | CCTATAAA (UniPROBE 20160601), MA0650.4.1 (JASPAR 2024), MA0650.4.16 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCTATAAA |
| Type: | Heterodimer |
| Binding TFs: | Q62424 (Homeobox domain, Hox protein A13 N terminal) UP00134A (Homeobox domain) UP00173A (Homeobox domain, Homeobox KN domain) UP00180A (Homeobox domain) UP00183A (Homeobox domain) UP00597A (Homeobox domain) UP00597G (Homeobox domain) UP00597H (Homeobox domain) Q62424 |
| Binding Motifs: | UP00134A_1 mrmCyAATAAAAwwys UP00173A_1 wwwkCTCrTAAAawtw UP00180A_1 mwwyyAATAAAAhymh UP00183A_1 wwwbCTCGTAAAawtt UP00597A_2 ckyaawkCTCrTAAAawyrdmw UP00597G_1 wwtaaryYAATAAAAwtcwmww UP00597G_2 wrkmrayYAATAAAAwwcwmtt UP00597H_2 cwdwwwkCTCrTAAAawtdgmd MA0650.4 CCAATAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Knosp W. M., Saneyoshi C., Shou S., Bachinger H. P., Stadler H. S. Elucidation, quantitative refinement, and in vivo utilization of the HOXA13 DNA binding site.. J. Biol. Chem. 282:6843-6853 (2007). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.