DNA Binding Motif

						

			
Accessions: MA0650.4 (JASPAR 2024)

			
Names: Hoxa13
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Consensus: CCAATAAA
Weblogo: 
PSSM: P0      A      C      G      T
01   1442  12600   1889   1317      C
02   1273  14100     77   1798      C
03  14069   1594    146   1439      A
04  15410    243    666    929      A
05    105    249    232  16662      T
06  15804    205    407    832      A
07  16813    125     98    212      A
08  16550    306    145    247      A
Type: Heterodimer
Binding TFs: Q62424 (Homeobox domain, Hox protein A13 N terminal)
Q62424
Binding Sites: MA0650.4.6
MA0650.4.11 / MA0650.4.3
MA0650.4.20 / MA0650.4.7
MA0650.4.2
MA0650.4.1 / MA0650.4.16
MA0650.4.8
MA0650.4.15 / MA0650.4.4
MA0650.4.18 / MA0650.4.19
MA0650.4.13 / MA0650.4.14
MA0650.4.10 / MA0650.4.9
MA0650.4.12
MA0650.4.17
MA0650.4.5
			
Publications: Knosp W. M., Saneyoshi C., Shou S., Bachinger H. P., Stadler H. S. Elucidation, quantitative refinement, and in vivo utilization of the HOXA13 DNA binding site.. J. Biol. Chem. 282:6843-6853 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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