DNA Binding Site
| Accessions: | ACAACTGT (UniPROBE 20160601), MA1620.2.7 (JASPAR 2024) |
| Organisms: | Mus musculus, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ACAACTGT |
| Type: | Heterodimer |
| Binding TFs: | UP00036A (Helix-loop-helix DNA-binding domain, Myogenic Basic domain) UP00548A (Helix-loop-helix DNA-binding domain) Q9QX98 (Helix-loop-helix DNA-binding domain) Q9QX98 |
| Binding Motifs: | UP00036A_1 rrrgrACAGbTGtyyg UP00036A_2 vsmrmCAgmCgcrcc UP00548A_1 sGgamrGrCACGTGtCsyhCysy MA1620.2 aCACCTGt |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Meredith DM, Borromeo MD, Deering TG, Casey BH, Savage TK, Mayer PR, Hoang C, Tung KC, Kumar M, Shen C, Swift GH, Macdonald RJ, Johnson JE. Program specificity for Ptf1a in pancreas versus neural tube development correlates with distinct collaborating cofactors and chromatin accessibility. Mol Cell Biol 33:3166-79 (2013). [Pubmed] |
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