DNA Binding Site
| Accessions: | 3clc_E (3D-footprint 20231221), 4x4b_E (3D-footprint 20231221), 4x4c_E (3D-footprint 20231221), 4x4d_E (3D-footprint 20231221), 4x4e_E (3D-footprint 20231221), 4x4f_E (3D-footprint 20231221), 4x4g_E (3D-footprint 20231221), 4x4h_E (3D-footprint 20231221), 4x4i_E (3D-footprint 20231221) |
| Organisms: | Enterobacter sp. RFL1396 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Length: | 35 |
| Sequence: | ATGTGACTTATAGTCCGTGTGATTATAGTCAACAT |
| Type: | Heterodimer |
| Binding TFs: | 3clc_D / 4x4b_D / 4x4c_D / 4x4d_D / 4x4e_D / 4x4f_D / 4x4g_D / 4x4h_D / 4x4i_D (Helix-turn-helix, Helix-turn-helix domain) 3clc_B / 4x4b_C / 4x4c_C / 4x4d_C / 4x4e_C / 4x4f_C / 4x4g_C / 4x4h_C / 4x4i_C (Helix-turn-helix, Helix-turn-helix domain) |
| Binding Motifs: | 4x4h_C CaCa 3clc_ABCD TGTnGACnnnnGnCACACGGnCnnnnATTCACA 3clc_B CGgac 4x4b_ABCD TGTnGAcnnnnTnCACrCnGannnnnAGTcACA 4x4b_C / 4x4d_C tGtG 4x4c_ABCD TGTGACTnnnnnTCnGCGTGnAnnnnGTCnACA 4x4c_C tGtG 4x4d_ABCD TGTGACTnnnnntCnGyGTGnAnnnngTCnACA 4x4e_ABCD TGTnGACnnnnTnCACRCnGannnnnAGTcACA 4x4e_C tGtG 4x4f_ABCD TGTGACTnnnnntCnGyGTGnAnnnnGTCnACA 4x4f_C / 4x4g_C CaCa 4x4g_ABCD TGTnGACnnnnTnCACRCnGAnnnnnAGTCACA 4x4h_ABCD TGTGACTnnnnntCnGyGTGnAnnnngTCnACA 4x4i_ABCD TGTGACTnnnnnTCnGYGTGnAnnnnGTCnACA 4x4i_C CaCa |
| Publications: | McGeehan J.E, Streeter S.D, Thresh S.J, Ball N, Ravelli R.B, Kneale G.G. Structural analysis of the genetic switch that regulates the expression of restriction-modification genes. Nucleic acids research 36:4778-87 (2008). [Pubmed] Bury C, Garman EF, Ginn HM, Ravelli RB, Carmichael I, Kneale G, McGeehan JE. Radiation damage to nucleoprotein complexes in macromolecular crystallography. J Synchrotron Radiat 22:213-24 (2015). [Pubmed] |
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