DNA Binding Motif

						

			
Accessions: 4x4f_ABCD (3D-footprint 20231221)

			
Names: Regulatory protein
Organisms: Enterobacter sp. RFL1396
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 20.6 MGy
Length: 33
Consensus: TGTGACTnnnnntCnGyGTGnAnnnnGTCnACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      1      1      1     93      T
04     17      0     76      3      G
05     96      0      0      0      A
06      0     96      0      0      C
07      3      0      0     93      T
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      3     13     15     65      t
14      1     92      1      2      C
15     24     24     24     24      n
16      2      0     94      0      G
17      0     57      1     38      y
18      1     17     78      0      G
19      1      4      1     90      T
20      0      1     95      0      G
21     24     24     24     24      n
22     93      1      1      1      A
23     24     24     24     24      n
24     24     24     24     24      n
25     24     24     24     24      n
26     24     24     24     24      n
27     15      7     71      3      G
28      1      1      1     93      T
29      0     96      0      0      C
30     24     24     24     24      n
31     93      1      1      1      A
32      0     96      0      0      C
33     96      0      0      0      A
Type: Heterodimer
Binding TFs: 4x4f_A / 4x4f_D (Helix-turn-helix, Helix-turn-helix domain)
4x4f_B / 4x4f_C (Helix-turn-helix, Helix-turn-helix domain)
Binding Sites: 4x4f_E
4x4f_F
			
Publications: Bury C, Garman EF, Ginn HM, Ravelli RB, Carmichael I, Kneale G, McGeehan JE. Radiation damage to nucleoprotein complexes in macromolecular crystallography. J Synchrotron Radiat 22:213-24 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.