Transcription Factor
| Accessions: | 3clc_B (3D-footprint 20231221), 3clc_C (3D-footprint 20231221), 3ufd_B (3D-footprint 20231221), 4x4b_B (3D-footprint 20231221), 4x4b_C (3D-footprint 20231221), 4x4c_B (3D-footprint 20231221), 4x4c_C (3D-footprint 20231221), 4x4d_B (3D-footprint 20231221), 4x4d_C (3D-footprint 20231221), 4x4e_B (3D-footprint 20231221), 4x4e_C (3D-footprint 20231221), 4x4f_B (3D-footprint 20231221), 4x4f_C (3D-footprint 20231221), 4x4g_B (3D-footprint 20231221), 4x4g_C (3D-footprint 20231221), 4x4h_B (3D-footprint 20231221), 4x4h_C (3D-footprint 20231221), 4x4i_B (3D-footprint 20231221), 4x4i_C (3D-footprint 20231221) |
| Names: | Q8GGH0_9ENTR, Regulatory protein |
| Organisms: | Enterobacter sp. RFL1396 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Uniprot: | Q8GGH0 |
| Length: | 77 |
| Pfam Domains: | 12-62 Helix-turn-helix 12-62 Helix-turn-helix domain |
| Sequence: (in bold interface residues) | 1 ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 60 61 VSDVVFFEMLIKEILKH |
| Interface Residues: | 24, 33, 34, 35, 36, 38, 39, 42, 44, 45 |
| 3D-footprint Homologues: | 3zkc_A, 8ity_P, 3s8q_A, 3u3w_B |
| Binding Motifs: | 4x4h_C CaCa 3clc_ABCD TGTnGACnnnnGnCACACGGnCnnnnATTCACA 3clc_B CGgac 3ufd_AB TGTCGACTATAGTCTACA 4x4b_ABCD TGTnGAcnnnnTnCACrCnGannnnnAGTcACA 4x4b_C / 4x4d_C tGtG 4x4c_ABCD TGTGACTnnnnnTCnGCGTGnAnnnnGTCnACA 4x4c_C tGtG 4x4d_ABCD TGTGACTnnnnntCnGyGTGnAnnnngTCnACA 4x4e_ABCD TGTnGACnnnnTnCACRCnGannnnnAGTcACA 4x4e_C tGtG 4x4f_ABCD TGTGACTnnnnntCnGyGTGnAnnnnGTCnACA 4x4f_C / 4x4g_C CaCa 4x4g_ABCD TGTnGACnnnnTnCACRCnGAnnnnnAGTCACA 4x4h_ABCD TGTGACTnnnnntCnGyGTGnAnnnngTCnACA 4x4i_ABCD TGTGACTnnnnnTCnGYGTGnAnnnnGTCnACA 4x4i_C CaCa |
| Binding Sites: | 3clc_E / 4x4b_E / 4x4c_E / 4x4d_E / 4x4e_E / 4x4f_E / 4x4g_E / 4x4h_E / 4x4i_E 3clc_F / 4x4b_F / 4x4c_F / 4x4d_F / 4x4e_F / 4x4f_F / 4x4g_F / 4x4h_F / 4x4i_F 3ufd_C 3ufd_D |
| Publications: | McGeehan J.E, Streeter S.D, Thresh S.J, Ball N, Ravelli R.B, Kneale G.G. Structural analysis of the genetic switch that regulates the expression of restriction-modification genes. Nucleic acids research 36:4778-87 (2008). [Pubmed] Ball N.J, McGeehan J.E, Streeter S.D, Thresh S.J, Kneale G.G. The structural basis of differential DNA sequence recognition by restriction-modification controller proteins. Nucleic acids research 40:10532-42 (2012). [Pubmed] Bury C, Garman EF, Ginn HM, Ravelli RB, Carmichael I, Kneale G, McGeehan JE. Radiation damage to nucleoprotein complexes in macromolecular crystallography. J Synchrotron Radiat 22:213-24 (2015). [Pubmed] |
| Related annotations: | PaperBLAST |
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