DNA Binding Motif

						

			
Accessions: GCM2_DLX3_1 (HumanTF2 1.0)

			
Names: GCM2_DLX3
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 19
Consensus: aTrcGGGywkwyttAATtr
Weblogo: 
PSSM: P0      A      C      G      T
01   2925    671   1195    163      a
02     75    305    133   4120      T
03   1338    206   2782      0      r
04   1320   4120   1341    836      c
05    437     36   4120    361      G
06      0     24   4120      6      G
07      0     26   4120     59      G
08    621   1275    347   1877      y
09   1271    904    825   1120      w
10    968    812   1088   1253      k
11   1283    766    875   1196      w
12    893   1114   1019   1094      y
13    925    709   1008   1479      t
14   1109    763    359   4120      t
15   4120    354    647    586      A
16   4120     32    232    429      A
17    511    467    793   4120      T
18    844    534    937   3183      t
19   1959    437   2161    861      r
Type: Heterodimer
Binding TFs: DLX3_TF2 (Homeobox domain)
GCM2_TF1 (GCM motif protein)
DLX3_Crystal (Homeobox domain)
DLX3_Full (Homeobox domain, Homeobox protein distal-less-like N terminal )
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.