DNA Binding Motif
| Accessions: | UP00048A_1 (UniPROBE 20160601) |
| Names: | alpha, Nr1b1, RAR alpha 1, RAR-alpha, Rara, RARalpha1, retinoic acid receptor, Retinoic acid receptor alpha |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | kmycAAAGGTCAcstg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.18 0.27 0.33 k 02 0.28 0.36 0.12 0.25 m 03 0.11 0.27 0.23 0.39 y 04 0.24 0.41 0.15 0.20 c 05 0.85 0.05 0.04 0.06 A 06 0.81 0.01 0.17 0.01 A 07 0.91 0.01 0.09 0 A 08 0 0 0.99 0.01 G 09 0 0 0.90 0.10 G 10 0 0 0.01 0.99 T 11 0 0.98 0.01 0.02 C 12 0.96 0 0.03 0 A 13 0.18 0.52 0.08 0.22 c 14 0.18 0.38 0.31 0.12 s 15 0.23 0.23 0.22 0.32 t 16 0.22 0.17 0.37 0.24 g |
| Binding TFs: | UP00048A (Zinc finger, C4 type (two domains)) |
| Binding Sites: | AAGGTCAA AAGGTCAC AAGGTCAT AATGACCT AGAGGTCA AGGGGTCA AGGTCAAA AGGTCAAG AGGTCACA AGGTCACC AGGTCACG AGGTCAGC AGGTCATC CAAGGTCA CGAGGTCA GAAGGTCA GAGGTCAA GAGGTCAC TAAGGTCA CTGACCTC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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