DNA Binding Site

Accessions: AAGGTCAT (UniPROBE 20160601)
Organisms: Mus musculus, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: AAGGTCAT
Type: Heterodimer
Binding TFs: UP00009A (Zinc finger, C4 type (two domains))
UP00048A (Zinc finger, C4 type (two domains))
UP00053A (Zinc finger, C4 type (two domains))
UP00079A (Zinc finger, C4 type (two domains))
UP00606A (Zinc finger, C4 type (two domains))
Binding Motifs: UP00009A_1 dmtcAAAGGTCAhswg
UP00048A_1 kmycAAAGGTCAcstg
UP00053A_1 tshykTGACCCCdyrmt
UP00079A_1 kmkyCAAGGTCAtrykm
UP00009A_2 ckcgysGGGTCAsbyw
UP00048A_2 akagysGGGTCAakkm
UP00053A_2 kcrcrwAGktyrtwmk
UP00079A_2 vkbkAGGGGTCAarssm
UP00606A_1 mywgvhhTmGAGGTCAwmbwrsy
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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