DNA Binding Motif

Accessions: 5jlx_A (3D-footprint 20231221)
Names: Homeotic protein antennapedia
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: AntpHD with 15bp DNA duplex S-monothioated at Cytidine-8
Length: 7
Consensus: GCATTAG
01 7 7 73 9 G
02 0 96 0 0 C
03 73 9 7 7 A
04 0 0 0 96 T
05 7 9 7 73 T
06 75 7 7 7 A
07 0 0 96 0 G
Binding TFs: 5jlx_A (Homeobox domain)
Binding Sites: 5jlx_C
Publications: Nguyen D, Zandarashvili L, White MA, Iwahara J. Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity. Chembiochem 17:1636-42 (2016). [Pubmed]

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