DNA Binding Motif

Accessions: UP00022A_1 (UniPROBE 20160601)
Names: Zfp740, Zinc finger protein 740, Znf740
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 16
Consensus: ycyccCCCCCCmmwys
Weblogo:
PSSM: P0 A C G T
01 0.14 0.40 0.14 0.33 y
02 0.19 0.42 0.22 0.18 c
03 0.17 0.34 0.17 0.31 y
04 0.15 0.59 0.15 0.12 c
05 0.14 0.66 0.11 0.09 c
06 0.22 0.75 0.01 0.02 C
07 0.02 0.96 0 0.01 C
08 0.01 0.98 0 0.01 C
09 0.01 0.98 0 0.01 C
10 0.03 0.96 0 0.02 C
11 0.20 0.76 0.01 0.04 C
12 0.49 0.36 0.03 0.12 m
13 0.31 0.40 0.07 0.23 m
14 0.25 0.23 0.21 0.30 w
15 0.16 0.30 0.14 0.40 y
16 0.18 0.29 0.32 0.21 s
Binding TFs: UP00022A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: AAGGGGGG
ACACCCCC
ACCCCCCA
ACCCCCCC
AGGGGGGG
ATGGGGGG
CACCCCCA
CACCCCCC
CCCCCCAA
CCCCCCAC
CCCCCCAG
CCCCCCCA
CCCCCCCC
CCCCCCCG
CCCCCCTC
GACCCCCC
GCACCCCC
GCCCCCCC
GGGGGGGA
TCCCCCCA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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