DNA Binding Motif

						

			
Accessions: 3n4m_ABC (3D-footprint 20231221)

			
Names: Catabolite gene activator
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: E. coli RNA polymerase alpha subunit C-terminal domain in complex with CAP and DNA
Length: 17
Consensus: TwnnnnnnnnnnTGtGA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     28      8      8     52      w
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      2      8      8     78      T
14      0      0     96      0      G
15     17     17     10     52      t
16      0      0     96      0      G
17     96      0      0      0      A
Binding TFs: 3n4m_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 3n4m_E
3n4m_D
			
	
			


			

				

				
				
				
				

			

			

		

	
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