DNA Binding Motif

						

			
Accessions: ELK1_HOXB13_2 (HumanTF2 1.0)

			
Names: ELK1_HOXB13
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: rvCGGAArywrTwAaa
Weblogo: 
PSSM: P0      A      C      G      T
01    285     69    204    119      r
02    154    155    144     36      v
03    159    489     44     12      C
04     15      3    489      5      G
05     18      0    489     36      G
06    489      9      0     25      A
07    489     73     17    111      A
08    182     62    219     25      r
09     60    220     35    268      y
10    201     95     64    129      w
11    327     46    161     78      r
12     87     10     46    489      T
13    298     19     36    191      w
14    489     17     46    107      A
15    489     79     51    109      a
16    181    111     87    108      a
Type: Heterodimer
Binding TFs: ELK1_TF2 (Ets-domain)
ELK1_Full (Ets-domain)
HOXB13_TF1 / HOXB13_TF2 (Homeobox domain)
ELK1_TF1 (Ets-domain)
HOXB13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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