DNA Binding Motif
| Accessions: | UP00523A_1 (UniPROBE 20160601) |
| Names: | FoxN5, FOXR1 |
| Organisms: | Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | scctcdmrCAAACAahyawkrk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.27 0.35 0.18 s 02 0.21 0.58 0.09 0.12 c 03 0.19 0.39 0.24 0.17 c 04 0.23 0.24 0.19 0.34 t 05 0.16 0.40 0.21 0.23 c 06 0.32 0.06 0.32 0.30 d 07 0.38 0.30 0.24 0.08 m 08 0.36 0.06 0.35 0.23 r 09 0.01 0.96 0 0.02 C 10 0.98 0.01 0.01 0 A 11 0.98 0.01 0.01 0.01 A 12 0.96 0 0.01 0.03 A 13 0 0.95 0 0.04 C 14 0.92 0.01 0.05 0.02 A 15 0.51 0.20 0.18 0.11 a 16 0.33 0.26 0.07 0.33 h 17 0.16 0.40 0.05 0.39 y 18 0.36 0.22 0.22 0.20 a 19 0.30 0.09 0.24 0.38 w 20 0.11 0.24 0.27 0.38 k 21 0.28 0.16 0.44 0.11 r 22 0.21 0.16 0.26 0.37 k |
| Binding TFs: | UP00523A (Fork head domain) |
| Binding Sites: | AACAAACA ACAAACAA ATTGTTTG CAAACAAA CAAACAAC GCAAACAA AAGTTTGC ACAAACAC ACAAACAG AGCAAACA AGGCAAAC AGTGTTTG ATCAAACA ATGTTTGC CACAAACA CGCAAACA GACAAACA GGCAAACA GTCAAACA TCAAACAA |
| Publications: | Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed] |
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