DNA Binding Motif

						

			
Accessions: 3oqo_AC (3D-footprint 20231221)

			
Names: Catabolite control protein A
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Ccpa-hpr-ser46p-syn cre
Length: 14
Consensus: TGnraACGcnnaCA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03     24     24     24     24      n
04     40     20     28      8      r
05     61     11     17      7      a
06     87      0      8      1      A
07      0     96      0      0      C
08      0      0     96      0      G
09     17     52     14     13      c
10     24     24     24     24      n
11     24     24     24     24      n
12     61      7     23      5      a
13      0     96      0      0      C
14     96      0      0      0      A
Type: Heterodimer
Binding TFs: 3oqo_C (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain, Periplasmic binding protein domain)
3oqo_A (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain, Periplasmic binding protein domain)
Binding Sites: 3oqo_E
3oqo_B
			
Publications: Schumacher M.A, Sprehe M, Bartholomae M, Hillen W, Brennan R.G. Structures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators. Nucleic acids research 39:2931-42 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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