Transcription Factor
| Accessions: | UP00198A (UniPROBE 20160601) |
| Names: | Cphx, cytoplasmic polyadenylated homeobox, Homeobox protein ESO1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q8BX39 |
| Description: | cytoplasmic polyadenylated homeobox |
| Length: | 93 |
| Pfam Domains: | 18-70 Homeobox domain 38-70 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 TKDNRSKARKRYGSRNSKPRHKFSRDELKRLKQEFAYAPYPDFTTKDELARQFQCEVSVI 60 61 DNWFQNKRARLAPELKSKISAMRRMRRCQDYMR |
| Interface Residues: | 15, 17, 18, 19, 20, 21, 22, 58, 61, 62, 65, 66, 69, 70 |
| 3D-footprint Homologues: | 3cmy_A, 2h1k_B, 3d1n_M, 1zq3_P, 2lkx_A, 6m3d_C, 2ld5_A, 4cyc_A, 1ig7_A, 5flv_I, 1b72_A, 3a01_E, 1jgg_B, 5hod_A, 3lnq_A, 1puf_A, 2hdd_A, 5jlw_D, 3rkq_B, 2r5y_A, 1fjl_B, 4xrs_G, 2hos_A, 7psx_B, 1k61_B, 1le8_B, 1mnm_C, 2xsd_C, 7q3o_C, 7xrc_C, 5zfz_A, 6fqp_B, 3l1p_A, 5zjt_E, 4qtr_D, 6fqq_E, 1du0_A, 6a8r_A, 4xrm_B, 1puf_B, 8g87_X, 6es3_K |
| Binding Motifs: | UP00198A_1 rTGATssmATCAaw |
| Binding Sites: | AATCAATC ACCAATCA ATCAATCA ATGATTGA ATGATTGG ATTGATTG CAATCAAA CAATCAAC CAATCAAG CAATCATA CCAATCAA CCAATCAC CCAATCAG CCCAATCA GCCAATCA GTCAATCA GTGATTGA TCAATCAA TCCAATCA TGATTGAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.