DNA Binding Site

						

			
Accessions: CCAATCAC (UniPROBE 20160601), MA0060.4.17 (JASPAR 2024)

			
Organisms: Mus musculus, Homo sapiens, Oryctolagus cuniculus, Rattus norvegicus
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: CCAATCAC
Type: Heterodimer
Binding TFs: P23511 (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B)
UP00198A (Homeobox domain, Homeobox KN domain)
P23511
Binding Motifs: UP00198A_1 rTGATssmATCAaw
MA0060.4 CCAATCAg
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]


Mantovani R. A survey of 178 NF-Y binding CCAAT boxes. Nucleic Acids Res. 26:1135-1143 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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