DNA Binding Motif
| Accessions: | UP00198A_1 (UniPROBE 20160601) |
| Names: | Cphx, cytoplasmic polyadenylated homeobox, Homeobox protein ESO1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | rTGATssmATCAaw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.34 0.18 0.26 0.22 r 02 0.03 0 0 0.96 T 03 0.04 0.02 0.93 0.01 G 04 0.98 0.01 0.01 0.01 A 05 0.04 0 0.06 0.90 T 06 0.10 0.37 0.29 0.24 s 07 0.22 0.28 0.35 0.15 s 08 0.54 0.34 0.08 0.04 m 09 0.95 0.03 0.01 0.01 A 10 0.01 0.01 0 0.99 T 11 0 0.97 0 0.02 C 12 0.95 0.01 0.01 0.03 A 13 0.61 0.14 0.15 0.10 a 14 0.36 0.21 0.10 0.33 w |
| Binding TFs: | UP00198A (Homeobox domain, Homeobox KN domain) |
| Binding Sites: | AATCAATC ACCAATCA ATCAATCA ATGATTGA ATGATTGG ATTGATTG CAATCAAA CAATCAAC CAATCAAG CAATCATA CCAATCAA CCAATCAC CCAATCAG CCCAATCA GCCAATCA GTCAATCA GTGATTGA TCAATCAA TCCAATCA TGATTGAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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