Transcription Factor

						

			
Accessions: 1l3l_C (3D-footprint 20231221), 1l3l_D (3D-footprint 20231221)

			
Names: Transcriptional activator protein traR, TRAR_RHIRD
Organisms: Agrobacterium tumefaciens, Rhizobium radiobacter (Agrobacterium tumefaciens)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P33905
Length: 225
Pfam Domains:    21-152 Autoinducer binding domain
  163-219 Bacterial regulatory proteins, luxR family
Sequence: 
(in bold interface residues)		   1 MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQST   60
  61 YFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKT  120
 121 ANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLAWLDPKEATYLRWIAVGK  180
 181 TMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI
Interface Residues: 182, 193, 194, 195, 197, 198, 199, 201, 202
3D-footprint Homologues: 1l3l_A, 5w43_B, 8dq1_C, 4wuh_B
Binding Motifs: 1l3l_AC TtTGCAnnnnnGCA
1l3l_BD GTGCAnnnnTGCA
Binding Sites: 1l3l_E / 1l3l_F / 1l3l_G / 1l3l_H
			
Publications: Zhang R.G, Pappas K.M, Pappas T, Brace J.L, Miller P.C, Oulmassov T, Molyneaux J.M, Anderson J.C, Bashkin J.K, Winans S.C, Joachimiak A. Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA. Nature 417:971-4 (2002). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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