Transcription Factor
| Accessions: | T05609 (AthalianaCistrome v4_May2016), Q9CA27 (JASPAR 2024) |
| Names: | AT1G68550, CRF10, T05609;, EF118_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 324 |
| Pfam Domains: | 112-159 AP2 domain |
| Sequence: (in bold interface residues) | 1 MVAIRKEQSLSGVSSEIKKRAKRNTLSSLPQETQPLRKVRIIVNDPYATDDSSSDEEELK 60 61 VPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKIAVSASPAVPRKKPVGVRQRK 120 121 WGKWAAEIRDPIKKTRTWLGTFDTLEEAAKAYDAKKLEFDAIVAGNVSTTKRDVSSSETS 180 181 QCSRSSPVVPVEQDDTSASALTCVNNPDDVSTVAPTAPTPNVPAGGNKETLFDFDFTNLQ 240 241 IPDFGFLAEEQQDLDFDCFLADDQFDDFGLLDDIQGFEDNGPSALPDFDFADVEDLQLAD 300 301 SSFGFLDQLAPINISCPLKSFAAS |
| Interface Residues: | 117, 119, 120, 121, 127, 129, 134, 136, 138 |
| 3D-footprint Homologues: | 5wx9_A, 1gcc_A, 7et4_D |
| Binding Motifs: | M0045 ccdcCkCCGCCGYcr M0114 wwrGAATCtwwGAThCy MA1671.1 cdcCGCCGCcr MA1671.2 cCGCCGCc |
| Binding Sites: | MA1671.2.17 / MA1671.2.3 MA1671.1.1 MA1671.1.10 MA1671.1.11 / MA1671.1.5 MA1671.1.12 / MA1671.1.6 MA1671.1.13 / MA1671.1.7 MA1671.1.14 / MA1671.1.8 MA1671.1.15 / MA1671.1.9 MA1671.1.16 MA1671.1.10 / MA1671.1.17 MA1671.1.11 / MA1671.1.18 MA1671.1.12 / MA1671.1.16 / MA1671.1.19 MA1671.1.1 / MA1671.1.2 MA1671.1.13 / MA1671.1.20 MA1671.1.2 / MA1671.1.3 MA1671.1.4 MA1671.1.3 / MA1671.1.5 MA1671.1.6 MA1671.1.7 MA1671.1.8 MA1671.1.4 / MA1671.1.9 MA1671.1.14 MA1671.1.15 MA1671.1.17 MA1671.1.18 MA1671.1.19 MA1671.1.20 MA1671.2.1 / MA1671.2.10 / MA1671.2.14 / MA1671.2.2 / MA1671.2.20 MA1671.2.11 / MA1671.2.12 / MA1671.2.15 / MA1671.2.16 / MA1671.2.4 / MA1671.2.6 MA1671.2.13 MA1671.2.18 MA1671.2.19 MA1671.2.5 MA1671.2.7 MA1671.2.8 MA1671.2.9 |
| Publications: | Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, Thompson A, Neri FV 3rd, Weaver M, Diegel M, Mnaimneh S, Yang A, Hughes TR, Nemhauser JL, Queitsch C, Stamatoyannopoulos JA. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana 8:2015-2030 (Cell). [Pubmed] |
| Related annotations: | PaperBLAST |
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