DNA Binding Motif

						

			
Accessions: MA1671.1 (JASPAR 2024)

			
Names: ERF118
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 11
Consensus: cdcCGCCGCcr
Weblogo: 
PSSM: P0      A      C      G      T
01    703   1819    234    643      c
02    977    385   1143    894      d
03    254   2309    354    482      c
04     30   3343      0     26      C
05    195      8   3186     10      G
06      0   3396      2      1      C
07     19   3370      3      7      C
08    170      9   3190     30      G
09      2   3338     11     48      C
10    593   1903    286    617      c
11    931    292   1537    639      r
Type: Heterodimer
Binding TFs: Q9CA27 (AP2 domain)
Q9CA27
Binding Sites: MA1671.1.1
MA1671.1.10
MA1671.1.11 / MA1671.1.5
MA1671.1.12 / MA1671.1.6
MA1671.1.13 / MA1671.1.7
MA1671.1.14 / MA1671.1.8
MA1671.1.15 / MA1671.1.9
MA1671.1.16
MA1671.1.10 / MA1671.1.17
MA1671.1.11 / MA1671.1.18
MA1671.1.12 / MA1671.1.16 / MA1671.1.19
MA1671.1.1 / MA1671.1.2
MA1671.1.13 / MA1671.1.20
MA1671.1.2 / MA1671.1.3
MA1671.1.4
MA1671.1.3 / MA1671.1.5
MA1671.1.6
MA1671.1.7
MA1671.1.8
MA1671.1.4 / MA1671.1.9
MA1671.1.14
MA1671.1.15
MA1671.1.17
MA1671.1.18
MA1671.1.19
MA1671.1.20
			
Publications: Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, Thompson A, Neri FV 3rd, Weaver M, Diegel M, Mnaimneh S, Yang A, Hughes TR, Nemhauser JL, Queitsch C, Stamatoyannopoulos JA. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana 8:2015-2030 (Cell). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.