Transcription Factor
| Accessions: | T02755 (AthalianaCistrome v4_May2016), O81913 (JASPAR 2024) |
| Names: | ANAC004, AT1G02230, T02755;, NAC domain-containing protein 4, NAC4_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 359 |
| Pfam Domains: | 4-132 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60 61 GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDG 120 121 SKTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQIHSLIPLVNSSG 180 181 GSEGSSFHSQELQNSSQSGVFANVQGESQIDDATTPIEEEWKTWLNNDGDEQRNIMFMQD 240 241 HRSDYTPLKSLTGVFSDDSSDDNDSDLISPKTNSIGTSSTCASFASSNHQIDQTQHSPDS 300 301 TVQLVSLTQEVSQGPGQVTVIREHKLGEESVKKKRASFVYRMIHRLVKKIHQCYSISRT |
| Interface Residues: | 73, 78, 80, 83, 89, 91, 93, 94, 117, 118, 119, 122, 147, 148, 149 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A, 6en1_A |
| Binding Motifs: | M0654 wrCTTsYtywryAAGywwsmt M0664 CTTsYtywryAAGt UN0369.1 dwTgCTTaTwwrAgAAGTTtcwww MA2043.1 wrCAAGAAAym MA2043.2 CAAGAAA |
| Binding Sites: | MA2043.2.8 MA2043.1.6 MA2043.1.7 MA2043.1.4 MA2043.1.5 MA2043.1.3 MA2043.1.1 MA2043.1.2 UN0369.1.1 UN0369.1.10 UN0369.1.11 UN0369.1.12 UN0369.1.13 UN0369.1.14 UN0369.1.15 UN0369.1.16 UN0369.1.17 UN0369.1.18 UN0369.1.19 UN0369.1.2 UN0369.1.20 UN0369.1.3 UN0369.1.4 UN0369.1.5 UN0369.1.6 UN0369.1.7 UN0369.1.8 UN0369.1.9 MA2043.1.10 / MA2043.1.16 MA2043.1.17 MA2043.1.11 MA2043.1.12 MA2043.1.13 MA2043.1.14 MA2043.1.15 MA2043.1.18 MA2043.1.19 MA2043.1.20 MA2043.1.8 MA2043.1.9 MA2043.2.17 / MA2043.2.4 / MA2043.2.5 / MA2043.2.7 MA2043.2.10 / MA2043.2.15 / MA2043.2.16 / MA2043.2.20 / MA2043.2.6 MA2043.2.11 / MA2043.2.12 / MA2043.2.13 / MA2043.2.14 / MA2043.2.18 / MA2043.2.19 / MA2043.2.2 / MA2043.2.3 / MA2043.2.9 MA2043.2.1 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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