Transcription Factor

						

			
Accessions: Q4H2K3 (JASPAR 2024)

			
Names: Q4H2K3_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H2K3
Length: 323
Pfam Domains:     58-85 C2H2 type zinc-finger (2 copies)
    64-86 C2H2-type zinc finger
    65-86 C2H2-type zinc finger
    65-84 Zinc-finger of C2H2 type
    65-86 Zinc finger, C2H2 type
  157-179 C2H2 type zinc-finger (2 copies)
  158-170 C2H2-type zinc finger
  159-181 Zinc finger, C2H2 type
  160-181 C2H2-type zinc finger
  175-196 Zinc-finger double domain
  187-209 Zinc finger, C2H2 type
  187-209 C2H2-type zinc finger
  187-209 C2H2-type zinc finger
  204-226 Zinc-finger double domain
  215-237 C2H2-type zinc finger
  229-252 Zinc-finger double domain
  242-262 C2H2-type zinc finger
  243-265 C2H2-type zinc finger
  243-265 Zinc finger, C2H2 type
  258-281 Zinc-finger double domain
  271-293 C2H2-type zinc finger
  271-293 Zinc finger, C2H2 type
  271-281 C2H2-type zinc finger
  285-310 Zinc-finger double domain
  299-314 C2H2-type zinc finger
  299-322 C2H2-type zinc finger
  299-322 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MSPKKTKKSNKPVANKKWSPVTEVKQEIVEALPFPAEENKDEENTNKLRKTRSHTRKENG   60
  61 LPKLICSICNKTFQSQKRLANHMKLHDEDDQFSCEISFTDLCVMELTEPETAETNEGEGM  120
 121 KAEVEVTVDDAVPIFKPEKIKMFRTIDYRGRPKGKEMKTCPTCGKTFESTAKTKQHMRRV  180
 181 HAEVKNFQCKDCDKKFCTRSNLCSHMLVHSGERAYQCASCNHAFKTRLALKRHFLTHTGE  240
 241 RPYKCPYCDKTFRLSSTLIRHRDAHVKEKKYSCDICGKNFHQKVNLKQHLLIHTGEKPFS  300
 301 CKFCSKSFTQGSNLKSHVYKMHS
Interface Residues: 136, 138, 139, 142, 169, 170, 171, 172, 175, 179, 197, 198, 200, 201, 204, 208, 225, 226, 227, 228, 229, 231, 232, 234, 235, 238, 243, 253, 254, 255, 256, 257, 259, 260, 261, 262, 264, 281, 282, 283, 284, 285, 286, 287, 288, 289, 292, 309, 310, 311, 312, 313, 315, 316, 320
3D-footprint Homologues: 5v3j_F, 8ssq_A, 8ssu_A, 5yel_A, 6jnm_A, 5kl3_A, 7w1m_H, 2gli_A, 5kkq_D, 1tf6_A, 5yj3_D, 6a57_A, 1tf3_A, 5ei9_F, 5k5i_A, 6ml4_A, 7ysf_A, 2lt7_A, 6e94_A, 2jpa_A, 1ubd_C, 2kmk_A, 7n5w_A, 1g2f_F, 6blw_A, 5k5l_F, 6u9q_A, 4x9j_A, 8gn3_A, 8h9h_G, 4m9v_C, 3uk3_C, 8cuc_F, 7y3l_A, 7txc_E, 1llm_D, 2drp_D, 1f2i_J, 2wbs_A, 7y3m_I
Binding Motifs: UN0478.1 amaaamrAGAGAGmrmrgcs
UN0478.2 rAGAGAGm
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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