DNA Binding Motif

						

			
Accessions: UN0478.1 (JASPAR 2024)

			
Names: ZF-C2H2-15
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: amaaamrAGAGAGmrmrgcs
Weblogo: 
PSSM: P0      A      C      G      T
01    307    236    246    211      a
02    278    255    249    218      m
03    369    210    217    205      a
04    393    206    191    210      a
05    481    168    165    186      a
06    384    333    149    134      m
07    591     76    251     81      r
08    911     20     45     23      A
09     99     14    872     14      G
10    900     58     25     17      A
11     48     24    917     10      G
12    815    146     11     27      A
13     41     17    922     20      G
14    272    547     88     93      m
15    322    101    399    178      r
16    307    311    244    138      m
17    287    196    321    197      r
18    212    229    394    165      g
19    238    366    223    173      c
20    210    315    264    210      s
Type: Heterodimer
Binding TFs: Q4H2K3 (Zinc finger, C2H2 type, C2H2 type zinc-finger (2 copies), Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q4H2K3
			
	
			


			

				

				
				
				
				

			

			

		

	
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